DTI whole brain

Diffusion Tensor Imaging

FA scalar image

Fractional Aniosotropy

MD scalar image

Mean Diffusivity

AD scalar image

Axial Diffusivity

RD scalar image

Radial Diffusivity

Diffusion Outcomes

Preprocessing of Diffusion sequences and extraction of whole brain scalars, including: fractional anisotropy, mean diffusivity, axial diffusivity, and radial diffusivity. Preprocessing includes image cleaning using FSL's topup and eddy. Scalars are extracted using dtifit.

Preprocessing of multi-shell diffusion sequences (often called diffusion kurtosis) and extraction of whole brain scalars, including: fractional anisotropy, mean diffusivity, axial diffusivity, and radial diffusivity. Preprocessing includes image cleaning using FSL's topup and eddy. Scalars are extracted using dtifit.

Tract mapping from/to/through a single specified region.

Tract quantification for a set of predefined atlas regions throughout the whole brain.

TBD.