![jacobian](/sites/neuroimaging.uiowa.edu/files/styles/widescreen__1024_x_576/public/2022-05/sub-18255_ses-20210722095700_from-native_to-HCPYA_xfm-affine%2Bsyn_jac.png?h=2e916daa&itok=-R7hRhEh)
Acquisitions
Here are three examples of our functional image processing capabilities. See the captions for where to find more information about each method in the drop-down menus below.
![functional slice](/sites/neuroimaging.uiowa.edu/files/styles/widescreen__1024_x_576/public/2022-05/functional%20slice.png?h=5ac5dc15&itok=epzgh6tK)
Resting-state BOLD
See: INPC Functional Pipeline, Resting-state Connectivity
![functional slice](/sites/neuroimaging.uiowa.edu/files/styles/widescreen__1024_x_576/public/2022-05/functional%20slice.png?h=5ac5dc15&itok=epzgh6tK)
Task-related BOLD
See: INPC Functional Pipeline, Single-trial Beta Deconvolution
![ASL map](/sites/neuroimaging.uiowa.edu/files/styles/widescreen__1024_x_576/public/2022-12/ASL.png?h=4a3a04bd&itok=5U1D-CAd)
Arterial Spin Labeling
See: ASL Perfusion Map
BOLD: Blood Oxygen Level-Dependent
Resting-state BOLD: imaging a brain at rest
Task-related BOLD: imaging an engaged brain
Functional Outcomes
INPC standard functional processing of resting-state and task-related BOLD data, including:
- Motion correction
- Normalization
- One-step nuisance regression
Voxel-wise connectivity mapping to a single region of interest.
Whole-brain connectivity matrix for atlas-defined ROIs.
Deconvolution of task-based fMRI methods, including:
- LSS (least squares separate) or LSA (least squares all) methods
- Pending upgrades to include:
- Robust regression
- Linear mixed effects modelling
- Robust mixed effects regression
CUSTOM FUNCTIONAL ADD-ONS AND fMRIPREP TBD
This tool provides:
- Processing of Arterial Spin Labeling data
- Registerting to native and normal space